Publications

2010
Lars Doelken, Krmpotic, Astrid , Kothe, Sheila , Tuddenham, Lee , Tanguy, Melanie , Marcinowski, Lisa , Ruzsics, Zsolt , Elefant, Naama , Altuvia, Yael , Margalit, Hanah , Koszinowski, Ulrich H, Jonjic, Stipan , and Pfeffer, Sebastien . 2010. “Cytomegalovirus Micrornas Facilitate Persistent Virus Infection In Salivary Glands”. Plos Pathogens, 6, Pp. e1001150. doi:10.1371/journal.ppat.1001150.
Sebastien P Faucher, Friedlander, Gilgi , Livny, Jonathan , Margalit, Hanah , and Shuman, Howard A. 2010. “Legionella Pneumophila 6S Rna Optimizes Intracellular Multiplication”. Proceedings Of The National Academy Of Sciences Of The United States Of America, 107, Pp. 7533-7538. doi:10.1073/pnas.0911764107.
Ariel Jaimovich, Rinott, Ruty , Schuldiner, Maya , Margalit, Hanah , and Friedman, Nir . 2010. “Modularity And Directionality In Genetic Interaction Maps”. Bioinformatics, 26, Pp. i228-i236. doi:10.1093/bioinformatics/btq197.
Zohar Itzhaki, Akiva, Eyal , and Margalit, Hanah . 2010. “Preferential Use Of Protein Domain Pairs As Interaction Mediators: Order And Transitivity”. Bioinformatics, 26, Pp. 2564-2570. doi:10.1093/bioinformatics/btq495.
2009
Yishai Shimoni, Altuvia, Shoshy , Margalit, Hanah , and Biham, Ofer . 2009. “Stochastic Analysis Of The Sos Response In Escherichia Coli”. Plos One, 4, Pp. e5363. doi:10.1371/journal.pone.0005363.
2008
Eyal Akiva, Itzhaki, Zohar , and Margalit, Hanah . 2008. “Built-In Loops Allow Versatility In Domain-Domain Interactions: Lessons From Self-Interacting Domains”. Proceedings Of The National Academy Of Sciences Of The United States Of America, 105, Pp. 13292-13297. doi:10.1073/pnas.0801207105.
Naomi Habib, Kaplan, Tommy , Margalit, Hanah , and Friedman, Nir . 2008. “A Novel Bayesian Dna Motif Comparison Method For Clustering And Retrieval”. Plos Computational Biology, 4, Pp. e1000010. doi:10.1371/journal.pcbi.1000010.
Gilly Padalon-Brauch, Hershberg, Ruth , Elgrably-Weiss, Maya , Baruch, Kobi , Rosenshine, Ilan , Margalit, Hanah , and Altuvia, Shoshy . 2008. “Small Rnas Encoded Within Genetic Islands Of Salmonella Typhimurium Show Host-Induced Expression And Role In Virulence”. Nucleic Acids Research, 36, Pp. 1913-1927. doi:10.1093/nar/gkn050.
2007
Noam Stern-Ginossar, Elefant, Naama , Zimmermann, Albert , Wolf, Dana G, Saleh, Nivin , Biton, Moshe , Horwitz, Elad , Prokocimer, Zafnat , Prichard, Mark , Hahn, Gabriele , Goldman-Wohl, Debra , Greenfield, Caryn , Yagel, Simcha , Hengel, Hartmut , Altuvia, Yael , Margalit, Hanah , and Mandelboim, Ofer . 2007. “Host Immune System Gene Targeting By A Viral Mirna”. Science, 317, Pp. 376-381. doi:10.1126/science.1140956.
Adva Levy, Pitcovski, Jacob , Frankenburg, Shoshana , Elias, Orit , Altuvia, Yael , Margalit, Hanna , Peretz, Tamar , Golenser, Jacob , and Lotem, Michal . 2007. “A Melanoma Multiepitope Polypeptide Induces Specific Cd8+T-Cell Response”. Cellular Immunology, 250, Pp. 24-30. doi:10.1016/j.cellimm.2008.01.001.
Hanah Margalit. 2007. “Regulation Of Gene Expression By Small Non-Coding Rnas”. In Genome Informatics 2007, Vol 19, 19:Pp. 195. Natl Univ Singapore, Sch Comp; Natl Univ Singapore, Bioinformat Programme; World Sci; Wiley; Taylor & Francis.
Yishai Shimoni, Friedlander, Gilgi , Hetzroni, Guy , Niv, Gali , Altuvia, Shoshy , Biham, Ofer , and Margalit, Hanah . 2007. “Regulation Of Gene Expression By Small Non-Coding Rnas: A Quantitative View”. Molecular Systems Biology, 3, Pp. 138. doi:10.1038/msb4100181.
2006
Einat Sprinzak, Altuvia, Yael , and Margalit, Hanah . 2006. “Characterization And Prediction Of Protein-Protein Interactions Within And Between Complexes”. Proceedings Of The National Academy Of Sciences Of The United States Of America, 103, Pp. 14718-14723. doi:10.1073/pnas.0603352103.
Ruth Hershberg and Margalit, Hanah . 2006. “Co-Evolution Of Transcription Factors And Their Targets Depends On Mode Of Regulation”. Genome Biology, 7, Pp. R62. doi:10.1186/gb-2006-7-7-r62.
Zohar Itzhaki, Akiva, Eyal , Altuvia, Yael , and Margalit, Hanah . 2006. “Evolutionary Conservation Of Domain-Domain Interactions”. Genome Biology, 7, Pp. R125. doi:10.1186/gb-2006-7-12-r125.
Yanay Ofran and Margalit, Hanah . 2006. “Proteins Of The Same Fold And Unrelated Sequences Have Similar Amino Acid Composition”. Proteins-Structure Function And Bioinformatics, 64, Pp. 275-279. doi:10.1002/prot.20964.
A Jaimovich, Elidan, G , Margalit, H , and Friedman, N. 2006. “Towards An Integrated Protein-Protein Interaction Network: A Relational Markov Network Approach”. Journal Of Computational Biology, 13, Pp. 145-164. doi:10.1089/cmb.2006.13.145.
2005
T Kaplan, Friedman, N, and Margalit, H . 2005. “Ab Initio Prediction Of Transcription Factor Targets Using Structural Knowledge”. Plos Computational Biology, 1, Pp. e1. doi:10.1371/journal.pcbi.0010001.
A Zick, Onn, I , Bezalel, R , Margalit, H , and Shlomai, J. 2005. “Assigning Functions To Genes: Identification Of S-Phase Expressed Genes In Leishmania Major Based On Post-Transcriptional Control Elements”. Nucleic Acids Research, 33, Pp. 4235-4242. doi:10.1093/nar/gki742.
R Hershberg, Yeger-Lotem, E , and Margalit, H . 2005. “Chromosomal Organization Is Shaped By The Transcription Regulatory Network”. Trends In Genetics, 21, Pp. 138-142. doi:10.1016/j.tig.2005.01.003.