Publications

2025
Lior Aroeti, Elbaz, Netanel , Faigenbaum-Romm, Raya , Yakovian, Oren , Altuvia, Yael , Argaman, Liron , Katsowich, Naama , Bejerano-Sagie, Michal , Ravins, Miriam , Margalit, Hanah , Ben-Yehuda, Sigal , and Rosenshine, Ilan . 2025. “Formation Of A Membraneless Compartment Regulates Bacterial Virulence”. Nature Communications, 16, Pp. 3834. doi:10.1038/s41467-025-58829-9.
2024
Kwok Jian Goh, Altuvia, Yael , Argaman, Liron , Raz, Yair , Bar, Amir , Lithgow, Trevor , Margalit, Hanah , and Gan, Yunn-Hwen . 2024. “Ril-Seq Reveals Extensive Involvement Of Small Rnas In Virulence And Capsule Regulation In Hypervirulent Klebsiella Pneumoniae”. Nucleic Acids Research, 52, Pp. 9119-9138. doi:10.1093/nar/gkae440.
Meshi Barsheshet Vigoda, Argaman, Liron , Kournos, Mark , and Margalit, Hanah . 2024. “Unraveling The Interplay Between A Small Rna And Rnase E In Bacteria”. Nucleic Acids Research, 52, Pp. 8947-8966. doi:10.1093/nar/gkae621.
2023
Yair E Gatt, Savion, Dana , Bamberger, Tal , and Margalit, Hanah . 2023. “Convergent Within-Host Adaptation Of Pseudomonas Aeruginosa Through The Transcriptional Regulatory Network”. Msystems, 8. doi:10.1128/msystems.00024-23.
Mor Rubinstein, Makhon, Andrei , Losev, Yelena , Valenci, Gal Zizelski, Gatt, Yair E, Margalit, Hanah , Fass, Ephraim , Kutikov, Ina , Murik, Omer , Zeevi, David A, Savyon, Michal , Tau, Luba , Shwartz, Hasia Kaidar, Dveyrin, Zeev , Rorman, Efrat , and Nissan, Israel . 2023. “Prolonged Survival Of A Patient With Active Mdr-Tb Hiv Co-Morbidity: Insights From A Mycobacterium Tuberculosis Strain With A Unique Genomic Deletion”. Frontiers In Medicine, 10, Pp. 1292665. doi:10.3389/fmed.2023.1292665.
Amir Bar, Argaman, Liron , Eldar, Michal , and Margalit, Hanah . 2023. “Trs: A Method For Determining Transcript Termini From Rnatag-Seq Sequencing Data”. Nature Communications, 14, Pp. 7843. doi:10.1038/s41467-023-43534-2.
2022
Gianluca Matera, Altuvia, Yael , Gerovac, Milan , Mouali, Youssef El, Margalit, Hanah , and Vogel, Jörg . 2022. “Global Rna Interactome Of Salmonella Discovers A 5′ Utr Sponge For The Micf Small Rna That Connects Membrane Permeability To Transport Capacity”. Molecular Cell, 82, Pp. 629+. doi:10.1016/j.molcel.2021.12.030.
Meshi Barsheshet, Fisher, Shira , and Margalit, Hanah . 2022. “Inferring The Contribution Of Small Rnas To Changes In Gene Expression In Response To Stress”. Nar Genomics And Bioinformatics, 4, Pp. lqac015. doi:10.1093/nargab/lqac015.
2021
Yair E Gatt and Margalit, Hanah . 2021. “Common Adaptive Strategies Underlie Within-Host Evolution Of Bacterial Pathogens”. Molecular Biology And Evolution, 38, Pp. 1101-1121. doi:10.1093/molbev/msaa278.
Sivan Pearl Mizrahi, Elbaz, Netanel , Argaman, Liron , Altuvia, Yael , Katsowich, Naama , Socol, Yaakov , Bar, Amir , Rosenshine, Ilan , and Margalit, Hanah . 2021. “The Impact Of Hfq-Mediated Srna-Mrna Interactome On The Virulence Of Enteropathogenic Escherichia Coli”. Science Advances, 7, Pp. eabi8228. doi:10.1126/sciadv.abi8228.
Amir Bar, Argaman, Liron , Altuvia, Yael , and Margalit, Hanah . 2021. “Prediction Of Novel Bacterial Small Rnas From Ril-Seq Rna-Rna Interaction Data”. Frontiers In Microbiology, 12, Pp. 635070. doi:10.3389/fmicb.2021.635070.
2020
Raya Faigenbaum-Romm, Reich, Avichai , Gatt, Yair E, Barsheshet, Meshi , Argaman, Liron , and Margalit, Hanah . 2020. “Hierarchy In Hfq Chaperon Occupancy Of Small Rna Targets Plays A Major Role In Their Regulation”. Cell Reports, 30, Pp. 3127+. doi:10.1016/j.celrep.2020.02.016.
2019
Saurabh Bhattacharya, Baidya, Amit K, Pal, Ritesh Ranjan , Mamou, Gideon , Gatt, Yair E, Margalit, Hanah , Rosenshine, Ilan , and Ben-Yehuda, Sigal . 2019. “A Ubiquitous Platform For Bacterial Nanotube Biogenesis”. Cell Reports, 27, Pp. 334+. doi:10.1016/j.celrep.2019.02.055.
2018
Avital Steiman-Shimony, Shtrikman, Orr , and Margalit, Hanah . 2018. “Assessing The Functional Association Of Intronic Mirnas With Their Host Genes”. Rna, 24, Pp. 991-1004. doi:10.1261/rna.064386.117.
Yael Altuvia, Bar, Amir , Reiss, Niv , Karavani, Ehud , Argaman, Liron , and Margalit, Hanah . 2018. “In Vivo Cleavage Rules And Target Repertoire Of Rnase Iii In Escherichia Coli”. Nucleic Acids Research, 46, Pp. 10380-10394. doi:10.1093/nar/gky684.
Yael Altuvia, Bar, Amir , Reiss, Niv , Karavani, Ehud , Argaman, Liron , and Margalit, Hanah . 2018. “In Vivo Cleavage Rules And Target Repertoire Of Rnase Ill In Escherichia Coli (Vol 46, Pg 10380, 2018)”. Nucleic Acids Research, 46, Pp. 10530-10531. doi:10.1093/nar/gky816.
Sahar Melamed, Faigenbaum-Romm, Raya , Peer, Asaf , Reiss, Niv , Shechter, Omer , Bar, Amir , Altuvia, Yael , Argaman, Liron , and Margalit, Hanah . 2018. “Mapping The Small Rna Interactome In Bacteria Using Ril-Seq”. Nature Protocols, 13, Pp. 1-33. doi:10.1038/nprot.2017.115.
2017
Mor Nitzan, Rehani, Rotem , and Margalit, Hanah . 2017. “Integration Of Bacterial Small Rnas In Regulatory Networks”. In Annual Review Of Biophysics, Vol 46, 46:Pp. 131-148. doi:10.1146/annurev-biophys-070816-034058.
Yuval Malka, Steiman-Shimony, Avital , Rosenthal, Eran , Argaman, Liron , Cohen-Daniel, Leonor , Arbib, Eliran , Margalit, Hanah , Kaplan, Tommy , and Berger, Michael . 2017. “Post-Transcriptional 3'-Utr Cleavage Of Mrna Transcripts Generates Thousands Of Stable Uncapped Autonomous Rna Fragments”. Nature Communications, 8, Pp. 2029. doi:10.1038/s41467-017-02099-7.
2016
Sahar Melamed, Peer, Asaf , Faigenbaum-Romm, Raya , Gatt, Yair E, Reiss, Niv , Bar, Amir , Altuvia, Yael , Argaman, Liron , and Margalit, Hanah . 2016. “Global Mapping Of Small Rna-Target Interactions In Bacteria”. Molecular Cell, 63, Pp. 884-897. doi:10.1016/j.molcel.2016.07.026.