Publications

2005
Y Altuvia, Landgraf, P , Lithwick, G , Elefant, N , Pfeffer, S , Aravin, A , Brownstein, MJ , Tuschl, T , and Margalit, H . 2005. “Clustering And Conservation Patterns Of Human Micrornas”. Nucleic Acids Research, 33, Pp. 2697-2706. doi:10.1093/nar/gki567.
T Kaplan, Friedman, N, and Margalit, H . 2005. “Predicting Transcription Factor Binding Sites Using Structural Knowledge”. In Research In Computational Molecular Biology, Proceedings, 3500:Pp. 522-537. Broad Inst MIT & Harvard; Boston Univ Ctr Adv Geonom Technol.
G Lithwick and Margalit, H . 2005. “Relative Predicted Protein Levels Of Functionally Associated Proteins Are Conserved Across Organisms”. Nucleic Acids Research, 33, Pp. 1051-1057. doi:10.1093/nar/gki261.
A Jaimovich, Elidan, G , Margalit, H , and Friedman, N. 2005. “Towards An Integrated Protein-Protein Interaction Network”. In Research In Computational Molecular Biology, Proceedings, 3500:Pp. 14-30. Broad Inst MIT & Harvard; Boston Univ Ctr Adv Geonom Technol.
2004
H Hermjakob, Montecchi-Palazzi, L , Lewington, C , Mudali, S , Kerrien, S , Orchard, S , Vingron, M , Roechert, B , Roepstorff, P , Valencia, A, Margalit, H , Armstrong, J , Bairoch, A , Cesareni, G , Sherman, D , and Apweller, R . 2004. “Intact: An Open Source Molecular Interaction Database”. Nucleic Acids Research, 32, Pp. D452-D455. doi:10.1093/nar/gkh052.
E Yeger-Lotem, Sattath, S , Kashtan, N , Itzkovitz, S , Milo, R , Pinter, RY , Alon, U , and Margalit, H . 2004. “Network Motifs In Integrated Cellular Networks Of Transcription-Regulation And Protein-Protein Interaction”. Proceedings Of The National Academy Of Sciences Of The United States Of America, 101, Pp. 5934-5939. doi:10.1073/pnas.0306752101.
Y Altuvia and Margalit, H . 2004. “A Structure-Based Approach For Prediction Of Mhc-Binding Peptides”. Methods, 34, Pp. 454-459. doi:10.1016/j.ymeth.2004.06.008.
2003
E Miriami, Margalit, H , and Sperling, R. 2003. “Conserved Sequence Elements Associated With Exon Skipping”. Nucleic Acids Research, 31, Pp. 1974-1983. doi:10.1093/nar/gkg279.
E Yeger-Lotem and Margalit, H . 2003. “Detection Of Regulatory Circuits By Integrating The Cellular Networks Of Protein-Protein Interactions And Transcription Regulation”. Nucleic Acids Research, 31, Pp. 6053-6061. doi:10.1093/nar/gkg787.
G Lithwick and Margalit, H . 2003. “Hierarchy Of Sequence-Dependent Features Associated With Prokaryotic Translation”. Genome Research, 13, Pp. 2665-2673. doi:10.1101/gr.1485203.
E Sprinzak, Sattath, S , and Margalit, H . 2003. “How Reliable Are Experimental Protein-Protein Interaction Data?”. Journal Of Molecular Biology, 327, Pp. 919-923. doi:10.1016/S0022-2836(03)00239-0.
E Zlotorynski, Rahat, A , Skaug, J , Ben-Porat, N , Ozeri, E , Hershberg, R , Levi, A , Scherer, SW , Margalit, H , and Kerem, B . 2003. “Molecular Basis For Expression Of Common And Rare Fragile Sites”. Molecular And Cellular Biology, 23, Pp. 7143-7151. doi:10.1128/MCB.23.20.7143-7151.2003.
R Hershberg, Altuvia, S , and Margalit, H . 2003. “A Survey Of Small Rna-Encoding Genes In Escherichia Coli”. Nucleic Acids Research, 31, Pp. 1813-1820. doi:10.1093/nar/gkg297.
2002
I Friedberg and Margalit, H . 2002. “Pecop: Automatic Determination Of Persistently Conserved Positions In Protein Families”. Bioinformatics, 18, Pp. 1276-1277. doi:10.1093/bioinformatics/18.9.1276.
I Friedberg and Margalit, H . 2002. “Persistently Conserved Positions In Structurally Similar, Sequence Dissimilar Proteins: Roles In Preserving Protein Fold And Function”. Protein Science, 11, Pp. 350-360. doi:10.1110/ps.18602.
2001
E Sprinzak and Margalit, H . 2001. “Correlated Sequence-Signatures As Markers Of Protein-Protein Interaction”. Journal Of Molecular Biology, 311, Pp. 681-692. doi:10.1006/jmbi.2001.4920.
O Schueler-Furman, Altuvia, Y , and Margalit, H . 2001. “Examination Of Possible Structural Constraints Of Mhc-Binding Peptides By Assessment Of Their Native Structure Within Their Source Proteins”. Proteins-Structure Function And Bioinformatics, 45, Pp. 47-54. doi:10.1002/prot.1122.
Y Altuvia, Lithwick, G , and Margalit, H . 2001. “Harnessing The Cellular Immune System To The Gene-Prediction Cart”. Trends In Genetics, 17, Pp. 732-734. doi:10.1016/S0168-9525(01)02496-9.
G Bejerano, Seldin, Y , Margalit, H , and Tishby, N . 2001. “Markovian Domain Fingerprinting: Statistical Segmentation Of Protein Sequences”. Bioinformatics, 17, Pp. 927-934. doi:10.1093/bioinformatics/17.10.927.
L Argaman, Hershberg, R , Vogel, J , Bejerano, G , Wagner, EGH , Margalit, H , and Altuvia, S . 2001. “Novel Small Rna-Encoding Genes In The Intergenic Regions Of Escherichia Coli”. Current Biology, 11, Pp. 941-950. doi:10.1016/S0960-9822(01)00270-6.