Publications

2015
Mor Nitzan, Mintzer, Sefi , and Margalit, Hanah . 2015. “Approaches And Developments In Studying The Human Microbiome Network”. Israel Journal Of Ecology & Evolution, 61, Pp. 90-94. doi:10.1080/15659801.2015.1042768.
Mor Nitzan, Fechter, Pierre , Peer, Asaf , Altuvia, Yael , Bronesky, Delphine , Vandenesch, François , Romby, Pascale , Biham, Ofer , and Margalit, Hanah . 2015. “A Defense-Offense Multi-Layered Regulatory Switch In A Pathogenic Bacterium”. Nucleic Acids Research, 43, Pp. 1357-1369. doi:10.1093/nar/gkv001.
Julia Sajman, Zenvirth, Drora , Nitzan, Mor , Margalit, Hanah , Simpson-Lavy, Kobi J, Reiss, Yuval , Cohen, Itamar , Ravid, Tommer , and Brandeis, Michael . 2015. “Degradation Of Ndd1 By Apc/Ccdh1 Generates A Feed Forward Loop That Times Mitotic Protein Accumulation”. Nature Communications, 6, Pp. 7075. doi:10.1038/ncomms8075.
Mor Nitzan, Shimoni, Yishai , Rosolio, Oded , Margalit, Hanah , and Biham, Ofer . 2015. “Stochastic Analysis Of Bistability In Coherent Mixed Feedback Loops Combining Transcriptional And Posttranscriptional Regulations”. Physical Review E, 91, Pp. 052706. doi:10.1103/PhysRevE.91.052706.
2014
Naama Wald and Margalit, Hanah . 2014. “Auxiliary Trnas: Large-Scale Analysis Of Trna Genes Reveals Patterns Of Trna Repertoire Dynamics”. Nucleic Acids Research, 42, Pp. 6552-6566. doi:10.1093/nar/gku245.
Asaf Peer and Margalit, Hanah . 2014. “Evolutionary Patterns Of Escherichia Coli Small Rnas And Their Regulatory Interactions”. Rna, 20, Pp. 994-1003. doi:10.1261/rna.043133.113.
Mor Nitzan, Wassarman, Karen M, Biham, Ofer , and Margalit, Hanah . 2014. “Global Regulation Of Transcription By A Small Rna: A Quantitative View”. Biophysical Journal, 106, Pp. 1205-1214. doi:10.1016/j.bpj.2014.01.025.
Mor Nitzan, Steiman-Shimony, Avital , Altuvia, Yael , Biham, Ofer , and Margalit, Hanah . 2014. “Interactions Between Distant Cernas In Regulatory Networks”. Biophysical Journal, 106, Pp. 2254-2266. doi:10.1016/j.bpj.2014.03.040.
2013
Efthimia Lioliou, Sharma, Cynthia M, Altuvia, Yael , Caldelari, Isabelle , Romilly, Cedric , Helfer, Anne-Catherine , Margalit, Hanah , and Romby, Pascale . 2013. “In Vivo Mapping Of Rna-Rna Interactions In Staphylococcus Aureus Using The Endoribonuclease Iii”. Methods, 63, Pp. 135-143. doi:10.1016/j.ymeth.2013.06.033.
2012
Naama Wald, Alroy, Maya , Botzman, Maya , and Margalit, Hanah . 2012. “Codon Usage Bias In Prokaryotic Pyrimidine-Ending Codons Is Associated With The Degeneracy Of The Encoded Amino Acids”. Nucleic Acids Research, 40, Pp. 7074-7083. doi:10.1093/nar/gks348.
Adiel Loinger, Shemla, Yael , Simon, Itamar , Margalit, Hanah , and Biham, Ofer . 2012. “Competition Between Small Rnas: A Quantitative View”. Biophysical Journal, 102, Pp. 1712-1721. doi:10.1016/j.bpj.2012.01.058.
Eyal Akiva, Friedlander, Gilgi , Itzhaki, Zohar , and Margalit, Hanah . 2012. “A Dynamic View Of Domain-Motif Interactions”. Plos Computational Biology, 8, Pp. e1002341. doi:10.1371/journal.pcbi.1002341.
Naomi Habib, Wapinski, Ilan , Margalit, Hanah , Regev, Aviv , and Friedman, Nir . 2012. “A Functional Selection Model Explains Evolutionary Robustness Despite Plasticity In Regulatory Networks”. Molecular Systems Biology, 8, Pp. 619. doi:10.1038/msb.2012.50.
Stefan Juranek, Eban, Tali , Altuvia, Yael , Brown, Miguel , Morozov, Pavel , Tuschl, Thomas , and Margalit, Hanah . 2012. “A Genome-Wide View Of The Expression And Processing Patterns Of Thermus Thermophilus Hb8 Crispr Rnas”. Rna, 18, Pp. 783-794. doi:10.1261/rna.031468.111.
Zohar Itzhaki and Margalit, Hanah . 2012. “Reduced Polymorphism In Domains Involved In Protein-Protein Interactions”. Plos One, 7, Pp. e34503. doi:10.1371/journal.pone.0034503.
2011
Asaf Peer and Margalit, Hanah . 2011. “Accessibility And Evolutionary Conservation Mark Bacterial Small-Rna Target-Binding Regions”. Journal Of Bacteriology, 193, Pp. 1690-1701. doi:10.1128/JB.01419-10.
Nicholas Rhind, Chen, Zehua , Yassour, Moran , Thompson, Dawn A, Haas, Brian J, Habib, Naomi , Wapinski, Ilan , Roy, Sushmita , Lin, Michael F, Heiman, David I, Young, Sarah K, Furuya, Kanji , Guo, Yabin , Pidoux, Alison , Chen, Huei Mei, Robbertse, Barbara , Goldberg, Jonathan M, Aoki, Keita , Bayne, Elizabeth H, Berlin, Aaron M, Desjardins, Christopher A, Dobbs, Edward , Dukaj, Livio , Fan, Lin , FitzGerald, Michael G, French, Courtney , Gujja, Sharvari , Hansen, Klavs , Keifenheim, Dan , Levin, Joshua Z, Mosher, Rebecca A, Mueller, Carolin A, Pfiffner, Jenna , Priest, Margaret , Russ, Carsten , Smialowska, Agata , Swoboda, Peter , Sykes, Sean M, Vaughn, Matthew , Vengrova, Sonya , Yoder, Ryan , Zeng, Qiandong , Allshire, Robin , Baulcombe, David , Birren, Bruce W, Brown, William , Ekwall, Karl , Kellis, Manolis , Leatherwood, Janet , Levin, Henry , Margalit, Hanah , Martienssen, Rob , Nieduszynski, Conrad A, Spatafora, Joseph W, Friedman, Nir , Dalgaard, Jacob Z, Baumann, Peter , Niki, Hironori , Regev, Aviv , and Nusbaum, Chad . 2011. “Comparative Functional Genomics Of The Fission Yeasts”. Science, 332, Pp. 930-936. doi:10.1126/science.1203357.
Naama Elefant, Berger, Amnon , Shein, Harel , Hofree, Matan , Margalit, Hanah , and Altuvia, Yael . 2011. “Reptar: A Database Of Predicted Cellular Targets Of Host And Viral Mirnas”. Nucleic Acids Research, 39, Pp. D188-D194. doi:10.1093/nar/gkq1233.
Maya Botzman and Margalit, Hanah . 2011. “Variation In Global Codon Usage Bias Among Prokaryotic Organisms Is Associated With Their Lifestyles”. Genome Biology, 12, Pp. R109. doi:10.1186/gb-2011-12-10-r109.
Naama Elefant, Altuvia, Yael , and Margalit, Hanah . 2011. “A Wide Repertoire Of Mirna Binding Sites: Prediction And Functional Implications”. Bioinformatics, 27, Pp. 3093-3101. doi:10.1093/bioinformatics/btr534.