Publications

2018
B. Hirshberg, Gerber, R. B. , and Krylov, A.I. . 2018. Autocorrelation Of Electronic Wave-Functions: A New Approach For Describing The Evolution Of Electronic Structure In The Course Of Dynamics. Molecular Physics, 116, Pp. 2512-2523. doi:10.1080/00268976.2018.1464675. Publisher's Version
Dorit Shemesh and Gerber, R. Benny . 2018. Molecular Dynamics Of Photoinduced Reactions Of Acrylic Acid: Products, Mechanisms, And Comparison With Experiment. Journal Of Physical Chemistry Letters, 9, Pp. 527-533.
B. Hirshberg, E. Molina, Rossich , Götz, A.W. , Hammerich, A.D. , Nathanson, G.M. , Bertram, T.H. , Johnson, M.A. , and Gerber, R. B.. 2018. N2O5 At Water Surfaces: Binding Forces, Charge Separation, Energy Accommodation And Atmospheric Implications. Physical Chemistry Chemical Physics, 20, Pp. 17961-17976. doi:10.1039/c8cp03022g. Publisher's Version
2017
Barak Hirshberg, Sagiv, Lior , and Gerber, R. Benny . 2017. Approximate Quantum Dynamics Using Ab Initio Classical Separable Potentials: Spectroscopic Applications. Journal Of Chemical Theory And Computation, 13, Pp. 982-991. . Publisher's Version
I. Zakai, Varner, M. E, and Gerber, R. B. . 2017. Concerted Transfer Of Multiple Protons In Acid-Ater Clusters: (Hcl)(H2O) (2) And (Hf)(H2O) (4). Physical Chemistry Chemical Physics, 19, Pp. 20641-20646.
Tapta Kanchan Roy, Nagornova, Natalia S, Boyarkin, Oleg V, and Gerber, R. Benny . 2017. A Decapeptide Hydrated By Two Waters: Conformers Determined By Theory And Validated By Cold Ion Spectroscopy. Journal Of Physical Chemistry A, 121, Pp. 9401-9408.
Johnny N. Naoum, Chandra, Koushik , Shemesh, Dorit , Gerber, R. Benny , Gilon, Chaim , and Hurevich, Mattan . 2017. Dmap-Assisted Sulfonylation As An Efficient Step For The Methylation Of Primary Amine Motifs On Solid Support. Beilstein Journal Of Organic Chemistry, 13, Pp. 806-816.
Barak Hirshberg and Gerber, R. Benny . 2017. Mean-Field Methods For Time-Dependent Quantum Dynamics Of Many-Atom Systems. In Advances In Quantum Chemistry: Ratner Volume, 75:Pp. 1-26.
Jing Xu, Finlayson-Pitts, Barbara J, and Gerber, R. Benny . 2017. Nanoparticles Grown From Methanesulfonic Acid And Methylamine: Microscopic Structures And Formation Mechanism. Physical Chemistry Chemical Physics, 19, Pp. 31949-31957.
Haihan Chen, Ezell, Michael J, Arquero, Kristine D, Varner, Mychel E, Dawson, Matthew L, Gerber, R. Benny , and Finlayson-Pitts, Barbara J. 2017. New Particle Formation And Growth From Methanesulfonic Acid, Trimethylamine And Water. Physical Chemistry Chemical Physics, 19, Pp. 4893-4893.
Kristine D Arquero, Xu, Jing , Gerber, R. Benny , and Finlayson-Pitts, Barbara J. 2017. Particle Formation And Growth From Oxalic Acid, Methanesulfonic Acid, Trimethylamine And Water: A Combined Experimental And Theoretical Study. Physical Chemistry Chemical Physics, 19, Pp. 28286-28301.
Kifle Z Aregahegn, Shemesh, Dorit , Gerber, R. Benny , and Finlayson-Pitts, Barbara J. 2017. Photochemistry Of Thin Solid Films Of The Neonicotinoid Imidacloprid On Surfaces. Environmental Science & Technology, 51, Pp. 2660-2668.
Jing Xu, Finlayson-Pitts, Barbara J, and Gerber, R. Benny . 2017. Proton Transfer In Mixed Clusters Of Methanesulfonic Acid, Methylamine, And Oxalic Acid: Implications For Atmospheric Particle Formation. Journal Of Physical Chemistry A, 121, Pp. 2377-2385.
Kristine D Arquero, Gerber, R. Benny , and Finlayson-Pitts, Barbara J. 2017. The Role Of Oxalic Acid In New Particle Formation From Methanesulfonic Acid, Methylamine, And Water. Environmental Science & Technology, 51, Pp. 2124-2130.
Patrick J Kelleher, Menges, Fabian S, DePalma, Joseph W, Denton, Joanna K, Johnson, Mark A, Weddle, Gary H, Hirshberg, Barak , and Gerber, R. Benny . 2017. Trapping And Structural Characterization Of The Xno2 Center Dot No3- (X = Ci, Br, I) Exit Channel Complexes In The Water-Mediated X- + N2O5 Reactions With Cryogenic Vibrational Spectroscopy. Journal Of Physical Chemistry Letters, 8, Pp. 4710-4715.
2016
Garold Murdachaew, Nathanson, Gilbert M, Gerber, R. Benny , and Halonen, Lauri . 2016. Deprotonation Of Formic Acid In Collisions With A Liquid Water Surface Studied By Molecular Dynamics And Metadynamics Simulations. Physical Chemistry Chemical Physics, 18, Pp. 29756-29770. . Publisher's Version
Jaroslaw Kalinowski, Foreman, Elizabeth S, Kapnas, Kara M, Murray, Craig , Rasanen, Markku , and R Gerber, Benny . 2016. Dynamics And Spectroscopy Of Ch2Oo Excited Electronic States. Physical Chemistry Chemical Physics, 18, Pp. 10941-10946. doi:10.1039/c6cp00807k. Abstract
The excited states of the Criegee intermediate CH2OO are studied in molecular dynamics simulations using directly potentials from multi-reference perturbation theory (MR-PT2). The photoexcitation of the species is simulated, and trajectories are propagated in time on the excited state. Some of the photoexcitation events lead to direct fragmentation of the molecule, but other trajectories describe at least several vibrations in the excited state, that may terminate by relaxation to the ground electronic state. Limits on the role of non-adiabatic contributions to the process are estimated by two different simulations, one that forces surface-hopping at potential crossings, and another that ignores surface hopping altogether. The effect of non-adiabatic transitions is found to be small. Spectroscopic implications and consequences for the interpretation of experimental results are discussed.
Tapta Kanchan Roy, Sharma, Rahul , and R Gerber, Benny . 2016. First-Principles Anharmonic Quantum Calculations For Peptide Spectroscopy: Vscf Calculations And Comparison With Experiments. Physical Chemistry Chemical Physics, 18, Pp. 1607-1614. doi:10.1039/c5cp05979h. Abstract
First-principles quantum calculations for anharmonic vibrational spectroscopy of three protected dipeptides are carried out and compared with experimental data. Using hybrid HF/MP2 potentials, the Vibrational Self-Consistent Field with Second-Order Perturbation Correction (VSCF-PT2) algorithm is used to compute the spectra without any ad hoc scaling or fitting. All of the vibrational modes (135 for the largest system) are treated quantum mechanically and anharmonically using full pair-wise coupling potentials to represent the interaction between different modes. In the hybrid potential scheme the MP2 method is used for the harmonic part of the potential and a modified HF method is used for the anharmonic part. The overall agreement between computed spectra and experiment is very good and reveals different signatures for different conformers. This study shows that first-principles spectroscopic calculations of good accuracy are possible for dipeptides hence it opens possibilities for determination of dipeptide conformer structures by comparison of spectroscopic calculations with experiment.
B. Hirshberg and Gerber, R. B. . 2016. Formation Of Carbonic Acid In Impact Of Co2 On Ice And Water. Journal Of Physical Chemistry Letters, 7, Pp. 2905-2909. doi:10.1021/acs.jpclett.6b01109. Publisher's Version